植物エピゲノム科学部門 殿崎グループ木原生物学研究所・横浜市立大学PLANT EPIGENOME SCIENCE — TONOSAKI Lab.Kihara Institute for Biological Research, YCU

PUBLICATIONS

論文

Publications

殿崎グループの主要な研究成果です。

Selected publications from the Tonosaki Group.

* Corresponding author

EC1 body controls sperm cell reception via gamete pit formation

Daichi Susaki, Hinako Oshirabe, Shiori Nagahara, Yumi Goto, Takao Oi, Hidenori Takeuchi, Mayuko Sato, Kiminori Toyooka, Hiromi Kakizaki, Naoya Sugi, Ari Yoshimura, Kaoru Tonosaki, Tetsu Kinoshita, Daisuke Maruyama

bioRxiv 2026.07.14.738444 (preprint)

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glmmDMR reveals replicate-level methylation variance as a major determinant of false-positive DMR detection

Yuki Daito, Mako Uechi, Tetsu Kinoshita, Kaoru Tonosaki*

bioRxiv 2026.06.29.734667 (preprint)

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Differential regulation of heterochromatin and euchromatin by GmDDM1 during seed development ensures seedling viability in soybean

Ahsen Gers, Kana Shiraishi, Kaoru Tonosaki, Satoru Okamoto, Akito Kaga, Ryota Kuroda, Jun-Ichi Matsuoka, Atsushi Toyoda, Taiji Kawakatsu, Chiho Maruko, Kazuki Takahashi, Keiichi Okazaki, Moeko Okada, Eigo Fukai*

The Plant Journal 126(4): e70921

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Epigenetic Regulation in Horticultural Crops

Keita Nishimura, Junji Miyazaki, Yoshinobu Takada, Mst. Arjina Akter, Kishore Kumar Sarker, Akhi Paul Chowdhury, Kaoru Tonosaki, Kenji Osabe, Elizabeth S. Dennis, Ryo Fujimoto

The Horticulture Journal 95(2): 141–163

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Comparative Evaluation of DNA Methylation Platforms Reveals Context- and Region-specific Biases

Mei Iwamura, Renmin Wu, Naomi Miyaji, Ayasha Akter, Motoki Shimizu, Ryo Fujimoto, Kaoru Tonosaki

The Horticulture Journal Advance online publication, Article ID SZD-125

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DECREASE IN DNA METHYLATION 1-mediated epigenetic regulation maintains gene expression balance required for heterosis in Arabidopsis thaliana

Kodai Matsuo, Renmin Wu, Hiroto Yonechi, Terumi Murakami, Satoshi Takahashi, Asuka Kamio, Mst. Arjina Akter, Yoshiki Kamiya, Keita Nishimura, Takakazu Matsuura, Kaoru Tonosaki, Motoki Shimizu, Yoko Ikeda, Hisato Kobayashi, Motoaki Seki, Elizabeth S. Dennis, Ryo Fujimoto

bioRxiv 2025.08.21.671646 (preprint)

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Identification of a Candidate Gene and Development of a Marker for Anthocyanin-free Florets at Low Temperature in Japanese Broccoli (Brassica oleracea var. italica)

Takumi Adachi, Haruna Okamoto, Yoko Shiroto, Mizuki Murakami, Chika Tateda, Motoki Shimizu, Kaoru Tonosaki, Katsunori Hatakeyama

The Horticulture Journal 94(2): 232–242

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Multilayered epigenetic control of persistent and stage-specific imprinted genes in rice endosperm

Kaoru Tonosaki*, Daichi Susaki, Hatsune Morinaka, Akemi Ono, Hiroki Nagata, Hiroyasu Furuumi, Ken-Ichi Nonomura, Yutaka Sato, Keiko Sugimoto, Luca Comai, Katsunori Hatakeyama, Taiji Kawakatsu*, Tetsu Kinoshita*

Nature Plants 10(8): 1231–1245

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Polycomb repression of the asexual embryo

Kaoru Tonosaki*, Tetsu Kinoshita*

Nature Plants 9(11): 1783–1784

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Will epigenetics be a key player in crop breeding?

Kaoru Tonosaki, Ryo Fujimoto, Elizabeth S. Dennis, Victor Raboy, Kenji Osabe*

Frontiers in Plant Science 13: 958350

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Temporal changes in transcripts of miniature inverted-repeat transposable elements during rice endosperm development

Hiroki Nagata, Akemi Ono, Kaoru Tonosaki, Taiji Kawakatsu, Yutaka Sato, Kentaro Yano, Yuji Kishima, Tetsu Kinoshita

The Plant Journal 109(5): 1035–1047

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Mutation of the imprinted gene OsEMF2a induces autonomous endosperm development and delayed cellularization in rice

Kaoru Tonosaki*, Akemi Ono, Megumi Kunisada, Megumi Nishino, Hiroki Nagata, Shingo Sakamoto, Saku T. Kijima, Hiroyasu Furuumi, Ken-Ichi Nonomura, Yutaka Sato, Masaru Ohme-Takagi, Masaki Endo, Luca Comai, Katsunori Hatakeyama, Taiji Kawakatsu, Tetsu Kinoshita*

The Plant Cell 33(1): 85–103

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Overcoming the species hybridization barrier by ploidy manipulation in the genus Oryza

Kaoru Tonosaki*, Daisuke Sekine, Takayuki Ohnishi, Akemi Ono, Hiroyasu Furuumi, Nori Kurata, Tetsu Kinoshita*

The Plant Journal 93(3): 534–544

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The importance of reproductive barriers and the effect of allopolyploidization on crop breeding

Kaoru Tonosaki, Kenji Osabe, Takahiro Kawanabe, Ryo Fujimoto

Breeding Science 66(3): 333–349

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Possible roles for polycomb repressive complex 2 in cereal endosperm

Kaoru Tonosaki*, Tetsu Kinoshita*

Frontiers in Plant Science 6: 144

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Draft sequences of the radish (Raphanus sativus L.) genome

Hiroyasu Kitashiba, Feng Li, Hideki Hirakawa, Takahiro Kawanabe, Zhongwei Zou, Yoichi Hasegawa, Kaoru Tonosaki, Sachiko Shirasawa, Aki Fukushima, Shuji Yokoi, Yoshihito Takahata, Tomohiro Kakizaki, Masahiko Ishida, Shunsuke Okamoto, Koji Sakamoto, Kenta Shirasawa, Satoshi Tabata, Takeshi Nishio

DNA Research 21(5): 481–490

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Genetic analysis of hybrid seed formation ability of Brassica rapa in intergeneric crossings with Raphanus sativus

Kaoru Tonosaki, K. Michiba, Sang Woo Bang, Hiroyasu Kitashiba, Yukio Kaneko, Takeshi Nishio

Theoretical and Applied Genetics 126(3): 837–846

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Identification of species in tribe Brassiceae by dot-blot hybridization using species-specific ITS1 probes

Kaoru Tonosaki, Takeshi Nishio

Plant Cell Reports 29(10): 1179–1186

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